This work was done as a collaboration between Oregon State University and NCI/NIH. Kindly cite the following paper if you use TkNA:
Newman, N.K., Macovsky, M.S., Rodrigues, R.R. et al. Transkingdom Network Analysis (TkNA): a systems framework for inferring causal factors underlying host–microbiota and other multi-omic interactions. Nat Protoc (2024). Nature.com/articles/TkNA

This analysis pipeline requires a combo of Experiment and Map files. You can add more combos with the "add" button.

Here are some links to two example data sets you can download and try: Toy Network Microbiome and Phenotype